Assessments of tropical insect diversity largely lacks known groups from which appropriate interpretations can be made, and ultimately undervalues the taxa of some regions. The ecology of Diptera within the tropics constitutes largely on the roles of nutrient breakdown, recycling, and pollination; as numerous Orchidaceae rely on pseudocopulatory mechanisms for effective pollination. Our study was conducted to explore and investigate the nocturnal diversity of the Order Diptera, with a special emphasis on Mosquitoes (Family: Culicidae), across multiple habitat types. The study site is in Cocha Cashu biological station along the Manu River in the Manu National Park, Peru. Sampling was conducted in early September during the dry season where we sampled several areas of varying vegetation communities, canopy coverage, and disturbance: river-side sample, lake-side sample, second-growth forest, and high-altitude cloud forest. We hypothesized that the highest diversity of morphospecies would occur in closed canopy areas with closer proximity to water bodies. Insects were collected using traps baited with a visual lure and soiled socks. Samples were filtered of other insect orders and individual dipterans were categorized using visual differences and similarities to create morphospecies groupings. Due to numerous variables, primarily trap efficacy and testing, our sample size was limited and as a result, our data could be expanded upon for further collection and analysis. The proceeding decreases in samples across a time-scale is largely due to bait methods. Overall, our hypothesis was supported by results indicating a higher species richness and diversity at sites in dense canopy coverage in proximity to a larger water body. Calculated Shannon diversity indices of 1.574 at the river closed canopy sampling site compared to 0.689 in the open canopy river site. These results may reflect habitat affinities of Dipterans in the tropics. Future testing will allow for increased understanding of Diptera communities in the tropics, taxa, and environmental health using certain species as indicators.