In recent years, local organizations have moved to restore the anthropogenically-altered shorelines of the Salish Sea. Changes to the beach and intertidal have been observed, however little research has recorded effects on the subtidal. This region is home to several species including eelgrass (Zostera marina), an important species in the Salish Sea often used to indicate ecosystem health. This research utilizes multibeam sonar bathymetric data to analyze changes to subtidal seafloor structure in response to shoreline modification and investigates potential subsequent ecosystem consequences. Two Washington state study sites were analyzed, Seahurst Park in Burien, and the Snohomish County Nearshore Restoration Project in Everett. Multibeam data was acquired using a Kongsberg EM 2040 system and post-processed in Caris HIPS to generate a base surface of sub-meter resolution. The data detected eelgrass beds in addition to revealing bathymetric changes. ArcGIS was used to generate descriptive and pattern metrics such as total elevation change, percent area changed, surface roughness, and Bathymetric Position Index. Data revealed small but noticeable changes in bathymetry and the presence of eelgrass following shoreline alteration. The changes observed could indicate that restoration may have negative consequences for Zostera populations and may potentially affect other organisms using the sublittoral habitat.