Current estimates place pancreatic adenocarcinoma within the top ten deadliest diagnosed cancers in the US and #1 for mortality (~98%, five years after diagnosis). Consequently, early detection and the study of its pathology are paramount. Typically, this is accomplished through microscopy of flat specimens that are taken from tissue core (TC) biopsies (d=400-1200 µm) of a patient's pancreas. In the Human Photonics Laboratory, we are attempting to enhance diagnostic sensitivity by using a 3D microscopy system, originally designed for single cells, to image entire 400 μm diameter TCs. Imaging thick, opaque TCs requires specimens to be optically cleared and stained. Therefore a microfluidic device (MD) was developed to prepare pancreas (pTCs) and agarose hydrogel (aTCs) cores in an "all-in-one" approach that simplifies, automates and preserves the 3D structure of TCs. Flow and diffusion properties for bulk tissue in MDs deviate from the well-characterized properties of single cells. Subsequently, designing the initial MD required investigating histological dye diffusion and fluid flow with TCs. We found transparent 1% agarose were a suitable pancreas substitute for observation/measurement of volumetric diffusion in an open chamber. In comparison, pTCs needed to be cut open for subsequent analysis. Initial results demonstrate that by 30 min, most dyes completely diffused through larger (L=10 mm, d=2 mm) aTCs, but concentration profiles between dyes varied. Although the density and stiffness of aTCs matched pTCs, diffusion differed, as dye in pancreas samples diffused only 12% as far as in agarose. Properties of dye diffusion into aTCs with flow were then studied on a smaller scale in a test microfluidic channel (L=5.2 cm, d=720 µm). A slow flow rate of 80 µL/s was created by a variable-height gravity line system. Initial results demonstrate that slow flow rates significantly attenuated dye diffusion into aTCs, but allowed the aTCs to remain stationary.