Active learning generally increases student achievement, but not all instructors experience the same magnitude of gains. This variation in student achievement is likely due to differences in how active learning is implemented in the classroom as well as differences in total classroom time devoted to active learning. Although multiple tools exist for characterizing active learning in the classroom, none have been used to explain variation in student achievement. We are developing a new type of Classroom Observation Tool (COT) that characterizes how closely an instructor’s use of active learning matches the best practices suggested in education literature and can be correlated with observed variation in student exam achievement. Currently, we are using the COT to analyze 3 randomly selected classroom sessions from 27 different introductory biology instructors using archived footage. We will create a linear model that combines instructor’s COT scores with controls for variability in student ability and exam challenge between instructors to predict student exam performance. This model will allow us to identify which elements measured by the COT are most strongly correlated with variation in student performance. With this baseline data, we will be able to recommend the use of the COT to help Faculty assess the effectiveness of their instruction, thereby enhancing teaching and student learning not only within Biology education at UW, but also across all postsecondary education.

Emma B. Andrews' diaries give insight into the lives of archeologists working in Egypt’s Valley of the Kings at the turn of the last century. Due to her association with the archeologist Theodore Davis, Andrews had a unique opportunity to see the excavations in the Valley of the Kings firsthand during her travels between 1889 and 1913. Though these diaries provide valuable cultural, social and archeological perspectives on this period of Egyptian history, they have gone largely unnoticed by the academic community, and this project intends to make these works available as invaluable for academia. In order to bridge a gap in the publishing world, the NEH-funded Newbook Digital Texts project provides a unique environment for the multi-media publication of texts, transcriptions, translations, and annotation of works that are not compatible with traditional publishing or available large-project digital platforms. Newbook Digital Texts’ collaborative nature enables individual projects to inexpensively adapt to the project, providing opportunities for individuals to publish academic works with less expense and hassle. It also enables people to access important texts and resources more easily. As undergraduate researchers, we have the opportunity to work with these primary texts, learning useful digital humanities skills. At the beginning of the process, we learned how to create a structured transcription, allowing us to auto-tag the text. During this process, we have been able to complete a structural analysis of the text. We all worked with XML formatting, creating name lists, and doing content tagging within the text. Additionally, we completed independent research for inclusion in the project’s Wikipedia. Upon reading through the diaries and editing them, our project recognized important links to other excavators and research done in the Valley of the Kings, and we believe the diaries will fill gaps within academia in this field.

The successful growth of a plant is dependent on many variables, such as location, extent of available resources, competition by other plants, and reproductive success; what if there was a way a plant could almost guarantee survival and success? Many invasive species have found ways to be very successful; Alliaria petiolata (garlic mustard) has developed allelopathy, which can decrease surrounding plants germination rates and ability to grow. In my experiment I will attempt to determine if different populations of garlic mustard have variations in allelopathic strength. At least ten samples of garlic mustard from three different locations throughout Seattle will be grown, along with ten control lettuce plants. The three sites for this experiment are Seola Park, Woodland Park, and the University of Washington. Throughout the experiment I will try to figure out if the lettuce seeds germination rate and growth abilities are affected as a result of the garlic mustard. I will plant lettuce seeds in with garlic mustard and analyze the germination rates compared to the control samples, and at the end of my experiment I will harvest the lettuce and garlic mustard samples, and they will be biomassed. The data collected will be analyzed for significant results. My hypothesis for this experiment is that the sites in which the garlic mustard has been present the longest will have the greatest negative effect on the lettuce plants; but, because I don't know how long each population has been established I believe the Seola Park location, because it had the largest garlic mustard population, will have the largest effect on the lettuce.

Speciation is the process by which one species becomes two species that can no longer interbreed. A common hypothesis is that infertility between closely related species is due to the rapid evolution of DNA double-strand-break (DSB) hotspots that are active in meiosis. DNA DSBs play an important role in meiosis by initiating recombination after chromosome replication and can be repaired as crossovers. During DNA DSB repair, the broken strand of a homologue invades and repairs its break with the strand of the aligned homologue by matching complementary nucleotides. The repair can result in a heteroduplex which refers to a mismatch, such as adenine paired with cytosine. Heteroduplex rejection occurs when the cell’s recombination machinery rejects recombination at sites where heteroduplex forms, and it is known to require the msh2 gene. We hypothesize that heteroduplex rejection inhibits DSB repair in interspecies hybrids and can result in infertility and thereby the isolation of species. Schizosaccharomyces kambucha and Schizosaccharomyces pombe are two very closely related fission yeast species that are 99.5% identical at the DNA sequence level. Despite their similar genetic makeup, we found that their hybrids show decreased fertility and decreased recombination frequencies. We are testing whether inhibiting heteroduplex rejection will increase the fertility and recombination rates of the fission yeast hybrids. For this experiment, we have created msh2Δ Schizosaccharomyces pombe and Schizosaccharomyces kambucha mutants that cannot do heteroduplex rejection so the cells should go through DNA DSB repair even if there are mismatches. We expect to see an increase in fertility and recombination in the msh2Δ hybrids. This research may be extended further to explain speciation in other organisms or unexplained infertility between human couples.

Triadic eye gaze, a form of coordinated attention, is defined as an infants’ eye gaze shifts between another person, and an outside object or person. The current study examined whether 9-month-olds’ triadic eye gaze influences language learning; we specifically asked whether infants who engage in more episodes of triadic eye gaze show increased phoneme learning in a foreign language. The current project was conducted as part of a larger research endeavor, the Interactive Exposure study, which examined infant language learning in the context of peer social interactions. In the Interactive Exposure study, infants were exposed to a foreign language, Mandarin Chinese, through individual and peer language exposure sessions. In 12 sessions over four weeks the infants watched video clips of Mandarin Chinese. Infants activated the 20-second video clips by touching the screen. Infants in individual exposure sessions were in the room with only the touchscreen and their caregiver whereas peer exposure sessions consisted of two infants and two caregivers. Following exposure, infants’ discrimination of the Mandarin Chinese phonemes was tested via Conditioned Head Turn procedure and an ERP task. Fifteen 9-month-old participants from the peer language exposure sessions were selected for the current analysis of triadic eye gaze patterns. Using ELAN coding software, infants’ eye gaze was coded for looks to their own caregiver, other caregiver, other infant, and screen. Next, episodes of triadic eye gaze were identified for eye gaze patterns that consisted of looks between the other infant, caregiver, other caregiver and screen (e,g,, other infant – TV – other infant). Although coding and analysis are currently underway, we predict that infants who engage in more episodes of triadic eye gaze will show increased phoneme learning. If our prediction is accurate, this finding will indicate that language learning requires complex social interactions, such as triadic patterns of attention.  

We  present an extension of the Astronomy Department’s curriculum for visually impaired junior high  school students. Our lesson plans are a complementary addition to  Noreen Grice's Braille and large print  readings. These lessons satisfy the Washington State Essential Academic Learning Requirements (EALR's) for junior high school students, the level at which students are introduced to astronomy. We  present here a sample of new material that covers the composition, formation and evolution of the Sun.   Our lessons include activities, audio tracks, 3D models, and online links to advanced topics. We outline additional curricula that we are actively  developing, such as biographies of visually impaired astronomers and topics including the formation and evolution of the Solar System's terrestrial planets.  We will test our curricula during this coming school year, as we did in  2007, at the Washington State  School for the Blind,  with the  expectation  of deeply  strengthening the  students' understanding of the  evolution of the Sun beyond what is available in their textbooks.  Ultimately, this curricula will be distributed and utilized throughout the United States as part of the on-going national and international efforts  to promote astronomy for those who are visually impaired.  We conclude with a description of our  role in building and testing additional educational tools.

My research details how the austerity measures enacted at the federal, state and county levels have impacted women's reproductive healthcare in Washington State since 2008. This project examines how public-private partnerships have emerged in response to widening disparities and cutbacks in women's reproductive healthcare access and provisioning. Through a case study of an NGO dedicated to enhancing women's access to reproductive health care, I demonstrate that new models of public health provisioning are emerging to fill the void left by the neoliberal rollback of state sponsored public health programs. In order to examine the ways in which austerity measures have impacted women's access to reproductive healthcare services in Washington State, I engaged in archival analysis of State budget documents detailing cutbacks/shifts in public health funding for the past five years. Additionally, I interviewed employees of the Washington Department of Health (DOH) and King County Public Health (KCPH) about the impact of funding decreases on their service provision programs. After establishing this broad landscape of state disinvestment, I moved into an examination of my case study organization and the ways in which shifts in funding structures for public health have facilitated the creation of new models of health governance.

Extrasolar planets are being discovered at an incredible rate today. We have yet to discover another planet that can support life as we know it, but that will very likely change soon. Currently, most exoplanets are discovered indirectly by the influence they have on their host stars. Therefore, we only know the temperature and size of an exoplanet as well as we know the temperature and size of the star it orbits. For low-mass stars in the spectral range between K5 and M2, models do not provide the desired accuracy for these parameters. I improve this accuracy for a sample of planet candidates discovered by the Kepler Space Telescope by using a technique that assigns the parameters of nearby and well studied "stellar twins" to the planet hosting stars. I find these stellar twins by comparing the spectra of planet hosting stars to the spectra of similar nearby stars. By assigning the parameters of the nearby stellar twins to the planet hosting stars, I reduce the uncertainties in size and temperature for the planet hosting stars. This will also reduce the uncertainties in the size and temperature of the exoplanets, and thus allow for a better determination of their habitability.

In most eukaryotic organisms, sexual reproduction is a critical component of the life cycle. Through meiosis, diploid cells containing two copies of each chromosome divide to produce genetically diverse haploid gametes (e.g. sperm) that contain one copy of each chromosome. This process is fundamental in sexual reproduction. Generally, meiosis results in a 50:50 transmission of heterozygous alleles into gametes. For example, human males make approximately 50% sperm with an X chromosome and 50% with a Y chromosome. Because only one copy of each chromosome can contribute to a given offspring, there is an evolutionary pressure on alleles to compete for preferential inclusion in gametes. Sometimes alleles can “cheat” to gain a greater than 50% transmission through meiosis. This is known as meiotic drive. Meiotic drive could have significant implications: altering fertility, speciation, and the evolution of chromosomes in eukaryotic organisms. For example, competition between alleles may be driving the rapid evolution of chromosome segregation factors acting during meiosis and mitosis, potentially driving chromosome segregation away from a theoretical ideal. Though meiotic drive has not been well understood due to limited model systems, we have developed a novel system utilizing genetically tractable fission yeast S. pombe and S. kambucha, to investigate meiotic conflicts between competing alleles. In S. pombe, heterozygous alleles are widely thought to segregate fairly in meiosis, suggesting that active meiotic drive loci are not present in this organism. We have found that silenced meiotic drivers can be de-repressed in aged germ cells, leading to greater than 90% transmission of certain alleles through meiosis. This provides experimental evidence in support of the evolution of cheating in meiotic processes that could ultimately result in decreased fertility amongst eukaryotic organisms, including humans. 

Lily blooming has recently been suggested to result from differential growth of the petals. The tissue expands along the edges, making them longer than the midrib. To accommodate for this excess length, the petal reverses its curvature, causing the bud to open. This is the growth driven mechanism for lily blooming. We inquired into the shape of the ripples resulting from edge growth and if we could observe direct evidence of the growth. We first investigated rippling, another consequence of edge growth. When the growth rate is high enough, lily petals ripple and their edges adopt their characteristic wavy shape. Using time-lapse imaging, we observed lily petals' edges rippling. We monitored the formation of several generations of ripples, with a fractal-like pattern of smaller waves superimposed onto larger ones. We also measured the temporal evolution of the ripples' wavelength, amplitude and arc length. We found that these quantities could be related using a geometric argument. Agreement between our prediction and observations is excellent. This indicates that in addition to biology, physics plays a significant role in determining the shape of lily petals. Second, we sought to quantify edge growth. We took quantitative measurements of the different growth rates, by tracking the positions of marks along the edge and along the midrib. We found that the growth rate is 35% larger along the edge than along the midrib, supporting the edge growth driven blooming model. We now want to measure the growth rates of different lily species, and investigate whether smaller growth rates can correlate to the absence of ripples. The purpose was to understand the 3D shape resulting from growth in a 2D sheet to supply knowledge leading to understanding plant development. It will also lead to applications in the packaging industry where flat shapes are made into 3D objects.

During the postembryonic transformation from larva to adult, zebrafish undergo a dramatic metamorphosis in pigment pattern. New pigment cells differentiate, interact, and migrate to form stripes of black cells (melanophores) and the interstripe regions of yellow cells (xanthophores); this pigment pattern characterizes adult zebrafish. My project investigates the roles of thyroid hormone (TH) in this dramatic transformation. We have produced a stable transgenic line expressing a transgene for nitroreductase exclusively in the thyroid gland. When I expose these transgenic fish to the drug metronidazole, toxic byproducts are produced in the thyroid gland, causing cell death and ablating the gland and preventing the fish from producing any TH. Using these thyroid ablated fish, I have characterized pigment cell differentiation and pattern formation in the absence of TH. I find that these thyroid ablated individuals do not develop xanthophores and show resulting disruptions in stripe boundary formation. Our lab has also found a zebrafish pigment mutant (opallus), which produces an excess of xanthophores. Mapping data from this mutant leads us to hypothesize that the phenotype is caused by a gain-of-function mutation in the receptor that stimulates TH production in the thyroid gland. I test the prediction that the excess xanthophore phenotype is caused by overproduction of TH by blocking TH synthesis using the drug methimazole, and show that these treatments rescue the opallus pigment phenotype, returning them to a wild-type pigment pattern. Moreover, I test the prediction that exposing wild-type zebrafish to exogenous TH produces an opallus-like pigment pattern. Thus, by quantifying the number of melanophores and xanthophores and their distribution across the flank in these hypothyroid and hyperthyroid backgrounds, I show that TH is both necessary and sufficient for xanthophore differentiation, and that both too much and too little thyroid hormone during the adult transformation grossly disrupts the formation of adult stripes.