Exploration of the geological structure of the seafloor is dependent upon acquiring accurate bathymetric data which includes representation of not only depth, but also a characterization of the acoustic backscatter due to absorption by the seafloor. Calibration of the Multibeam Echo Sounder system (MBES) used to acquire these data while the vessel experiences movement in heave, pitch, and roll, provides for accurate and comparative data between vessels and over time. This research investigates the use of the calibration methodology available with new post-processing sonar software prior to data acquisition. A patch test was conducted off the coast of Washington in early 2013 aboard the R/V Thomas G. Thompson using the Kongsberg EM302 multibeam sonar. The data obtained from this patch test were used as a case study. The new post-processing software is predicted to provide a more accurate bathymetric surface representation after the calibration method is performed. Results and recommendation from the calibration test are presented.