In recent years, nanoscience has become a major focus: from technologies in solar cell coatings, to developments in biomolecular detection methods. Utilization of unique optical absorption properties of noble metals, such as gold or silver, opens the door for harnessing photons in new and innovative ways. For these reasons, great emphasis has been placed on the synthesis and characterization of nanostructures. The Pozzo Group has recently shown that structured gold clusters can be formed in solution by exploiting the hydrophobic and steric interactions in self-assembling nanoparticles. Hydrophilic polyethylene-glycol (PEG) chains control long-range steric interactions, while hydrophobic alkane-thiol chains induce clustering through short-range attraction. This simple method has the potential to be a cheap and viable option for nanoscale fabrication; starting from the molecular level and building up. This method of nanoclustering yields multi-particle aggregates in solution. Clusters of different geometries and sizes are formed based on the number of consistuent gold particles in each aggregate. It has been shown that the total amount of PEG adhered to the surface of the gold particle impacts the extent of clustering. At lower PEG concentrations, more diverse populations of nanoclusters are observed. In this project, size-exclusion chromatography (SEC) is being utilized for separating cluster populations. A cluster dispersion is pumped through a column that is packed with a porous stationary phase. By size-exclusion, the largest clusters exit the bottom of the column first, while the smaller clusters have a higher retention time as they navigate the pores of the matrix. The viability of SEC for controlled separation of cluster populations is being investigated on different systems, with the goal of isolating populations of similar aggregation types. Population analysis with SEC is simple and can be used to identify the fundamental parameters that lead to polydispersity in cluster size and shape.